PhyloHiC
latest
1. Introduction and General Process
2. A few concepts to define
3. Preparing Data and Running an Analysis
4. Scripts and API documentation
5. File Formats
PhyloHiC
Docs
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Index
Index
B
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C
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D
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F
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G
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H
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I
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J
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L
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M
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N
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P
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R
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S
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W
B
binsize (hic.HiC attribute)
bootstrap (module)
C
chromosomes (hic.HiC attribute)
compute_adjacent() (in module genes)
current (hic.HiC attribute)
D
dist_all_pairs (module)
dist_pairs_indep (module)
distlib (module)
F
filter_values() (in module distlib)
G
genes (module)
get_contact() (hic.HiC method)
H
HiC (class in hic)
hic (module)
I
informative_traits (module)
inter (hic.HiC attribute)
iolib (module)
J
join_pairs (module)
L
load_all_maps() (hic.HiC method)
load_map() (hic.HiC method)
M
make_bed() (in module genes)
make_pairs (module)
N
norm_center (module)
NoSuchHeatmap
P
phylip() (in module iolib)
R
read_bed() (in module genes)
read_orthos() (in module iolib)
read_values() (in module iolib)
S
scaled_L2norm() (in module distlib)
statshic (module)
W
write_bed() (in module genes)
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